Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC11O43248 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
HOXC11O43248 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC11O43248 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.35■□□□□ 0.69
HOXC11O43248 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXC11O43248 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.35■□□□□ 0.69
HOXC11O43248 ZNF444P1-201ENST00000559497 298 ntBASIC19.35■□□□□ 0.69
HOXC11O43248 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.35■□□□□ 0.69
HOXC11O43248 MIR3180-5-201ENST00000583743 153 ntBASIC19.35■□□□□ 0.69
HOXC11O43248 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
HOXC11O43248 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC11O43248 AC036111.1-201ENST00000533973 1582 ntBASIC19.35■□□□□ 0.69
HOXC11O43248 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC11O43248 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC11O43248 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 AC125437.2-201ENST00000625180 2167 ntBASIC19.34■□□□□ 0.69
HOXC11O43248 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC11O43248 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 TEX21P-204ENST00000641479 1693 ntBASIC19.34■□□□□ 0.69
HOXC11O43248 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXC11O43248 VENTXP5-201ENST00000523979 775 ntBASIC19.34■□□□□ 0.69
HOXC11O43248 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXC11O43248 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXC11O43248 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
HOXC11O43248 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HOXC11O43248 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC11O43248 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC11O43248 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.34■□□□□ 0.69
HOXC11O43248 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
HOXC11O43248 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC11O43248 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.33■□□□□ 0.69
HOXC11O43248 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
HOXC11O43248 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
HOXC11O43248 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
HOXC11O43248 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC11O43248 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HOXC11O43248 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC11O43248 AC034232.1-201ENST00000506026 1064 ntBASIC19.33■□□□□ 0.68
HOXC11O43248 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC11O43248 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.33■□□□□ 0.68
HOXC11O43248 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.33■□□□□ 0.68
HOXC11O43248 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC11O43248 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
HOXC11O43248 LINC01311-201ENST00000565162 1445 ntBASIC19.33■□□□□ 0.68
HOXC11O43248 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
HOXC11O43248 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC11O43248 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.32■□□□□ 0.68
HOXC11O43248 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC11O43248 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC11O43248 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms