Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMX2-CTNND1H3BSU7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMX2-CTNND1H3BSU7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TMX2-CTNND1H3BSU7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.66■□□□□ 0.58
TMX2-CTNND1H3BSU7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 AC063952.2-201ENST00000498792 1227 ntBASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 WWOX-216ENST00000569818 525 ntBASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 KRT8P8-201ENST00000434750 1448 ntBASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMX2-CTNND1H3BSU7 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TMX2-CTNND1H3BSU7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.58
TMX2-CTNND1H3BSU7 LTB4R2-202ENST00000528054 3092 ntBASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 RNF152P1-201ENST00000397754 604 ntBASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 AC022616.7-201ENST00000525383 220 ntBASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 AC091076.1-201ENST00000610741 619 ntBASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 FZD10-202ENST00000539839 3282 ntBASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TMX2-CTNND1H3BSU7 TMEM179-206ENST00000616017 1645 ntBASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 AIRN-201ENST00000601203 4374 ntBASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 AL031432.5-201ENST00000641059 760 ntBASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TMX2-CTNND1H3BSU7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.62■□□□□ 0.57
TMX2-CTNND1H3BSU7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms