Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 PRKY-204ENST00000533551 1019 ntBASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 AL160286.2-201ENST00000567150 934 ntBASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 AC018470.1-201ENST00000624790 3129 ntBASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV3A0A0B4J244 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ANO7L1-203ENST00000602586 1720 ntBASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 HLA-L-209ENST00000420110 1011 ntBASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 C1QL1P1-201ENST00000568105 661 ntBASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 AC233263.1-201ENST00000578059 224 ntBASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV3A0A0B4J244 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms