Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-521P-201ENST00000516663 105 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 MRPL49P2-201ENST00000521066 465 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 VN1R85P-201ENST00000601587 426 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 ZYXP1-201ENST00000617638 118 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC241585.2-209ENST00000638217 143 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC138915.1-201ENST00000565427 1685 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 STX3-208ENST00000641815 3236 ntBASIC4.75□□□□□ -1.65
NPAS3Q8IXF0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AP000542.2-201ENST00000623199 6179 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 U8.10-201ENST00000384260 133 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 RNU6-820P-201ENST00000384273 107 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 RNU2-43P-201ENST00000410306 190 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AL627311.1-201ENST00000431514 115 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AL135790.2-201ENST00000437701 267 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AL590399.6-201ENST00000446396 307 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 RNU6-970P-201ENST00000516312 107 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 SNORA31.9-201ENST00000516429 84 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AC084851.1-201ENST00000529105 249 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AC015720.1-201ENST00000565251 277 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 CYP4A27P-201ENST00000567218 190 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 RN7SL435P-201ENST00000584418 282 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 IPO5P1-202ENST00000600039 287 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AC010999.1-201ENST00000611856 324 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AC093535.2-201ENST00000624769 2326 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 AC010329.5-201ENST00000623497 2174 ntBASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPAS3Q8IXF0 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 RNU6-1107P-201ENST00000364817 104 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 Y_RNA.328-201ENST00000365208 113 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 RNU6-728P-201ENST00000365375 104 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 SNORA37-201ENST00000384504 129 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 MIR450A2-201ENST00000385022 100 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 RNU6-821P-201ENST00000390995 107 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 U6atac.2-201ENST00000408644 118 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 RNU2-54P-201ENST00000410299 190 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 EIF4A1P11-201ENST00000451239 222 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AC010265.1-201ENST00000513509 211 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 RNA5SP249-201ENST00000516127 99 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AP003730.1-201ENST00000524605 285 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AL391903.3-201ENST00000612158 163 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 CENPCP1-201ENST00000533085 2578 ntBASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
NPAS3Q8IXF0 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RNA5SP52-201ENST00000362448 134 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RNU6-228P-201ENST00000362700 106 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RNU6-942P-201ENST00000363002 107 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 Y_RNA.287-201ENST00000364853 94 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RNU6-729P-201ENST00000384399 107 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC009963.1-201ENST00000417265 157 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RPS12P10-201ENST00000427031 377 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 PHBP16-201ENST00000446318 950 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC146507.2-201ENST00000460608 476 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 UQCRHP4-201ENST00000471686 272 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC091167.1-201ENST00000492017 396 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC006445.2-201ENST00000510061 472 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 RNU6-927P-201ENST00000516199 100 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC018442.3-201ENST00000523025 183 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms