Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
COL9A1P20849 AC069528.2-201ENST00000624849 1991 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 SNORD113.2-201ENST00000364166 89 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 SNORD87-201ENST00000364849 89 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 RNU6-622P-201ENST00000384272 103 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 MIR7-3-201ENST00000384898 110 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 MIR589-201ENST00000385238 99 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 RNA5SP496-201ENST00000391240 109 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 CYCSP19-201ENST00000411715 316 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 ATP6V0E1P4-201ENST00000427294 242 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 AC006445.2-201ENST00000510061 472 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC5.17□□□□□ -1.58
COL9A1P20849 TCL6_2.1-201ENST00000615162 119 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL9A1P20849 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.17□□□□□ -1.58
COL9A1P20849 BCORP1-203ENST00000513194 5093 ntBASIC5.17□□□□□ -1.58
COL9A1P20849 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.17□□□□□ -1.58
COL9A1P20849 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
COL9A1P20849 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL9A1P20849 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.16□□□□□ -1.58
COL9A1P20849 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.16□□□□□ -1.58
COL9A1P20849 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.16□□□□□ -1.58
COL9A1P20849 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC5.16□□□□□ -1.58
COL9A1P20849 AL590240.1-201ENST00000334118 313 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 RNU1-13P-201ENST00000384499 162 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 MIR449B-201ENST00000384995 97 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 CBX3P9-201ENST00000402326 552 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 Z92545.1-201ENST00000411782 234 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 NDUFS5P4-201ENST00000412983 318 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC5.16□□□□□ -1.58
COL9A1P20849 BX323845.1-201ENST00000432417 179 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.16□□□□□ -1.58
COL9A1P20849 NDUFS5P3-201ENST00000450668 321 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.16□□□□□ -1.58
COL9A1P20849 snoU13.4-201ENST00000458916 104 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AIG1P1-201ENST00000503376 148 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 HMGB1P22-201ENST00000505315 124 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.16□□□□□ -1.58
COL9A1P20849 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC5.16□□□□□ -1.58
COL9A1P20849 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC5.16□□□□□ -1.58
COL9A1P20849 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
COL9A1P20849 MTND5P18-201ENST00000445624 1801 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 AL513302.2-201ENST00000562313 1842 ntBASIC5.16□□□□□ -1.58
COL9A1P20849 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL9A1P20849 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
COL9A1P20849 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL9A1P20849 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL9A1P20849 SNORD114-7-201ENST00000362520 77 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 RN7SKP185-201ENST00000362813 326 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 RNU6-1107P-201ENST00000364817 104 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 RNU6-1131P-201ENST00000364955 107 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 Y_RNA.432-201ENST00000384087 111 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 MIR325-201ENST00000385260 98 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL9A1P20849 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL9A1P20849 EDDM3CP-201ENST00000415977 425 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 AL139281.1-201ENST00000422120 335 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC5.15□□□□□ -1.59
COL9A1P20849 IFNWP4-201ENST00000453148 294 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 PPIAP15-201ENST00000479662 484 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 AC117454.1-201ENST00000491120 168 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 AC108022.1-201ENST00000493466 478 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.15□□□□□ -1.59
COL9A1P20849 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.15□□□□□ -1.59
COL9A1P20849 AC114781.5-201ENST00000615297 108 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.15□□□□□ -1.59
COL9A1P20849 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL9A1P20849 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC5.15□□□□□ -1.59
COL9A1P20849 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL9A1P20849 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL9A1P20849 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.15□□□□□ -1.59
COL9A1P20849 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL9A1P20849 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL9A1P20849 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL9A1P20849 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.15□□□□□ -1.59
COL9A1P20849 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.15□□□□□ -1.59
COL9A1P20849 AC004944.1-201ENST00000517807 3059 ntBASIC5.15□□□□□ -1.59
COL9A1P20849 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.15□□□□□ -1.59
COL9A1P20849 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.14□□□□□ -1.59
COL9A1P20849 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL9A1P20849 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.14□□□□□ -1.59
COL9A1P20849 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
COL9A1P20849 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC5.14□□□□□ -1.59
COL9A1P20849 SCARNA15-201ENST00000607520 4325 ntBASIC5.14□□□□□ -1.59
COL9A1P20849 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL9A1P20849 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL9A1P20849 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms