Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC140Q96MF4 AC010680.1-201ENST00000590024 3590 ntBASIC3.56□□□□□ -1.84
CCDC140Q96MF4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AC021146.4-201ENST00000309229 279 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 RNU6-626P-201ENST00000363354 107 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 RNU6-137P-201ENST00000363680 108 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 RNU4-56P-201ENST00000364700 142 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 RNU1-64P-201ENST00000365443 163 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.541-201ENST00000384640 113 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 MIR329-1-201ENST00000385028 80 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 U3.26-201ENST00000391236 204 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AC112771.1-201ENST00000463581 102 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AL162713.1-201ENST00000604480 262 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AC069200.1-201ENST00000609511 323 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 AC005086.4-201ENST00000623065 213 ntBASIC3.55□□□□□ -1.84
CCDC140Q96MF4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
CCDC140Q96MF4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC139713.2-215ENST00000641428 5037 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.40-201ENST00000362645 93 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNU6-280P-201ENST00000364145 104 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 SNORA56-201ENST00000383966 129 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNU6-102P-201ENST00000384485 104 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 MRPL35P1-201ENST00000404272 572 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNU4-30P-201ENST00000410245 143 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC096649.2-201ENST00000416186 393 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC006463.2-201ENST00000473326 348 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC146944.2-203ENST00000502493 354 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC108043.1-201ENST00000512696 574 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC139495.1-202ENST00000513164 354 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNA5SP446-201ENST00000515955 82 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNA5SP54-201ENST00000516951 92 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNU6-111P-201ENST00000517179 105 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RN7SKP92-201ENST00000517266 244 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RPL23AP97-201ENST00000568955 471 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 MIR3923-201ENST00000579521 83 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 AC091178.1-203ENST00000584586 279 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RNU6-91P-201ENST00000607774 107 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 MAPK10-303ENST00000641324 3959 ntBASIC3.54□□□□□ -1.84
CCDC140Q96MF4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC140Q96MF4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC125257.1-201ENST00000560400 2930 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 SNORD115-8-201ENST00000363856 82 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 SNORD115-38-201ENST00000365037 82 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.416-201ENST00000384014 113 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RNU6-1145P-201ENST00000384246 107 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.478-201ENST00000384358 107 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 Y_RNA.515-201ENST00000384535 112 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RNA5SP397-201ENST00000391323 118 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC005002.2-201ENST00000438228 269 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC010326.1-201ENST00000462726 602 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AF213884.1-201ENST00000488102 463 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RN7SL812P-201ENST00000493791 279 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RPL7P47-201ENST00000497299 556 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RNU6-1338P-201ENST00000516328 91 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 RNU6-711P-201ENST00000517255 106 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 CYP4A27P-201ENST00000567218 190 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 MIR3136-201ENST00000583498 78 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AL391813.1-201ENST00000603098 260 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC010999.1-201ENST00000611856 324 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC141273.2-201ENST00000618989 130 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AC140113.4-201ENST00000622087 222 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms