Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 USMG5P1-201ENST00000425964 177 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 RPL26P6-201ENST00000440913 438 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 RN7SL93P-201ENST00000463035 293 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC116655.1-201ENST00000508324 901 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC092436.3-201ENST00000511788 257 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC008269.2-201ENST00000561915 1105 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AL451007.1-201ENST00000595491 289 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC006157.1-201ENST00000611750 366 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AL162274.2-201ENST00000614406 332 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 AC244205.2-202ENST00000635781 342 ntBASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SLC44A3Q8N4M1 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SLC44A3Q8N4M1 AC066616.2-201ENST00000559334 1481 ntBASIC3.59□□□□□ -1.84
SLC44A3Q8N4M1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
SLC44A3Q8N4M1 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 Y_RNA.47-201ENST00000362697 108 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 Y_RNA.149-201ENST00000363558 117 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-288P-201ENST00000363690 104 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-1059P-201ENST00000363752 98 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-26P-201ENST00000383985 107 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-842P-201ENST00000384269 107 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RN7SKP53-201ENST00000411337 315 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 COTL1P1-201ENST00000422309 375 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AL645568.3-201ENST00000433683 316 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-953P-201ENST00000459154 107 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC128713.1-201ENST00000471495 306 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 Y_RNA.661-201ENST00000516003 99 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 Vault.1-201ENST00000516474 102 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 SCARNA16.2-201ENST00000516520 172 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-914P-201ENST00000516749 109 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 RNU4-60P-201ENST00000517239 135 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC110588.1-201ENST00000559699 137 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC113195.1-201ENST00000579952 141 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 LRRC37A5P-203ENST00000580181 585 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC104695.3-201ENST00000604052 296 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 ELOCP5-201ENST00000604924 333 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 U73479.1-201ENST00000618062 168 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC006386.2-201ENST00000624491 75 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC012005.1-201ENST00000624575 75 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 AC007656.2-201ENST00000624902 4547 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 Z83843.1-201ENST00000604070 3685 ntBASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SLC44A3Q8N4M1 USP8P1-201ENST00000494673 3183 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 RNU1-18P-201ENST00000363062 164 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 Y_RNA.455-201ENST00000384230 98 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 Y_RNA.480-201ENST00000384364 102 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 MIR578-201ENST00000384828 96 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 RNU7-187P-201ENST00000458985 68 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 RNU7-138P-201ENST00000459479 64 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 FCF1P8-201ENST00000510322 597 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 SNORA70.14-201ENST00000516205 110 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 RNU6-794P-201ENST00000517261 64 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AL365361.1-201ENST00000566942 3481 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 MIR3668-201ENST00000582138 75 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 BDH2P1-201ENST00000602288 736 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AC124312.5-201ENST00000604451 268 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 U4.1-201ENST00000620349 87 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 AL021368.2-201ENST00000606125 5352 ntBASIC3.57□□□□□ -1.84
SLC44A3Q8N4M1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SLC44A3Q8N4M1 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms