Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 CYCSP39-201ENST00000565821 309 ntBASIC4.64□□□□□ -1.67
MSX1P28360 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.64□□□□□ -1.67
MSX1P28360 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.64□□□□□ -1.67
MSX1P28360 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 AP005432.2-201ENST00000608162 586 ntBASIC4.64□□□□□ -1.67
MSX1P28360 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.64□□□□□ -1.67
MSX1P28360 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
MSX1P28360 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 AC099654.2-201ENST00000433031 1980 ntBASIC4.64□□□□□ -1.67
MSX1P28360 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSX1P28360 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
MSX1P28360 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
MSX1P28360 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.63□□□□□ -1.67
MSX1P28360 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.63□□□□□ -1.67
MSX1P28360 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
MSX1P28360 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 RNU4-17P-201ENST00000365598 141 ntBASIC4.63□□□□□ -1.67
MSX1P28360 U3.19-201ENST00000390893 196 ntBASIC4.63□□□□□ -1.67
MSX1P28360 AC007738.1-201ENST00000413892 348 ntBASIC4.63□□□□□ -1.67
MSX1P28360 COX6B1P1-201ENST00000415962 213 ntBASIC4.63□□□□□ -1.67
MSX1P28360 SNRPEP9-201ENST00000436794 238 ntBASIC4.63□□□□□ -1.67
MSX1P28360 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.63□□□□□ -1.67
MSX1P28360 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.63□□□□□ -1.67
MSX1P28360 RN7SL738P-201ENST00000470264 297 ntBASIC4.63□□□□□ -1.67
MSX1P28360 AC020890.1-201ENST00000491837 504 ntBASIC4.63□□□□□ -1.67
MSX1P28360 AC093840.1-201ENST00000511599 336 ntBASIC4.63□□□□□ -1.67
MSX1P28360 RNU6-1333P-201ENST00000516162 93 ntBASIC4.63□□□□□ -1.67
MSX1P28360 RNU6-966P-201ENST00000516479 104 ntBASIC4.63□□□□□ -1.67
MSX1P28360 RNA5SP360-201ENST00000516555 118 ntBASIC4.63□□□□□ -1.67
MSX1P28360 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.63□□□□□ -1.67
MSX1P28360 TRAV28-201ENST00000557548 323 ntBASIC4.63□□□□□ -1.67
MSX1P28360 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.63□□□□□ -1.67
MSX1P28360 MIR4458-201ENST00000578872 75 ntBASIC4.63□□□□□ -1.67
MSX1P28360 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.63□□□□□ -1.67
MSX1P28360 AP002826.1-201ENST00000608835 315 ntBASIC4.63□□□□□ -1.67
MSX1P28360 uc_338.18-201ENST00000615451 175 ntBASIC4.63□□□□□ -1.67
MSX1P28360 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 AC087385.3-201ENST00000620477 187 ntBASIC4.63□□□□□ -1.67
MSX1P28360 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
MSX1P28360 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
MSX1P28360 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSX1P28360 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.62□□□□□ -1.67
MSX1P28360 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
MSX1P28360 OR51H2P-202ENST00000641424 3046 ntBASIC4.62□□□□□ -1.67
MSX1P28360 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX1P28360 RNU6-942P-201ENST00000363002 107 ntBASIC4.62□□□□□ -1.67
MSX1P28360 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
MSX1P28360 MIR192-201ENST00000384915 110 ntBASIC4.62□□□□□ -1.67
MSX1P28360 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.62□□□□□ -1.67
MSX1P28360 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 BTF3P11-201ENST00000426582 477 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AL590383.1-201ENST00000428602 75 ntBASIC4.62□□□□□ -1.67
MSX1P28360 RPS15AP5-201ENST00000436276 388 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AC010095.1-201ENST00000443543 144 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AL451050.1-201ENST00000450126 415 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AL137159.1-201ENST00000452808 512 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX1P28360 COX6B1P5-201ENST00000509843 249 ntBASIC4.62□□□□□ -1.67
MSX1P28360 RNU7-121P-201ENST00000516604 62 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AP004371.1-201ENST00000525240 214 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.62□□□□□ -1.67
MSX1P28360 MIR5571-201ENST00000577998 113 ntBASIC4.62□□□□□ -1.67
MSX1P28360 MIR3145-201ENST00000580727 82 ntBASIC4.62□□□□□ -1.67
MSX1P28360 RN7SL52P-201ENST00000584271 284 ntBASIC4.62□□□□□ -1.67
MSX1P28360 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 RN7SL722P-201ENST00000617780 284 ntBASIC4.62□□□□□ -1.67
MSX1P28360 RN7SL565P-201ENST00000618246 284 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AC006065.5-201ENST00000623427 349 ntBASIC4.62□□□□□ -1.67
MSX1P28360 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.62□□□□□ -1.67
MSX1P28360 AL592182.3-201ENST00000642132 3304 ntBASIC4.62□□□□□ -1.67
MSX1P28360 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.62□□□□□ -1.67
MSX1P28360 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.62□□□□□ -1.67
MSX1P28360 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
MSX1P28360 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 SAMMSON-226ENST00000642089 1582 ntBASIC4.61□□□□□ -1.67
MSX1P28360 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX1P28360 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 Y_RNA.218-201ENST00000364218 104 ntBASIC4.61□□□□□ -1.67
MSX1P28360 RNVU1-6-201ENST00000364688 164 ntBASIC4.61□□□□□ -1.67
MSX1P28360 RNU6-275P-201ENST00000364910 107 ntBASIC4.61□□□□□ -1.67
MSX1P28360 SNORA66-201ENST00000384792 133 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX1P28360 CR769767.1-201ENST00000436337 346 ntBASIC4.61□□□□□ -1.67
MSX1P28360 RPS29P33-201ENST00000456717 146 ntBASIC4.61□□□□□ -1.67
MSX1P28360 RPS27P26-201ENST00000494583 239 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms