Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR6730-201ENST00000622213 67 ntBASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
HIF3AQ9Y2N7 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
HIF3AQ9Y2N7 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 TLK1P1-201ENST00000456760 2440 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 C4BPAP1-201ENST00000415474 1893 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU1-83P-201ENST00000363426 164 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-968P-201ENST00000384076 107 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-1181P-201ENST00000384191 106 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 Y_RNA.497-201ENST00000384447 98 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 MIR32-201ENST00000384965 70 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 BTF3L4P2-201ENST00000392798 346 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RPS4XP3-201ENST00000398541 413 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU2-68P-201ENST00000410878 191 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RNU5E-9P-201ENST00000411164 104 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 TOMM22P1-201ENST00000418578 312 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AL590383.1-201ENST00000428602 75 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC011742.1-201ENST00000431448 434 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RPS26P2-201ENST00000440331 348 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RPL23AP3-201ENST00000453844 468 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC108751.2-201ENST00000469993 231 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AP000870.1-201ENST00000472927 406 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 KC877373.1-201ENST00000479066 408 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RN7SL727P-201ENST00000482164 296 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RPL30P1-201ENST00000488676 339 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC140059.1-201ENST00000489238 361 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RN7SKP66-201ENST00000516681 231 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC027309.3-201ENST00000623419 351 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 AC009541.1-201ENST00000438279 2662 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 ZNF826P-207ENST00000622273 1910 ntBASIC4.33□□□□□ -1.72
HIF3AQ9Y2N7 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 MIR186-201ENST00000384988 86 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AC024067.1-201ENST00000426199 223 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AC009237.7-201ENST00000447357 229 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AL353705.4-201ENST00000449661 238 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 NUTF2P7-201ENST00000453086 375 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 snoU13.4-201ENST00000458916 104 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AC073901.1-201ENST00000462471 408 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AL049830.2-201ENST00000480072 201 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 RN7SL346P-201ENST00000491561 294 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AC010265.1-201ENST00000513509 211 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 MIR3691-201ENST00000578066 90 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 AL365222.1-201ENST00000614661 98 ntBASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HIF3AQ9Y2N7 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 Y_RNA.446-201ENST00000384178 104 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-17P-201ENST00000384245 107 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-18P-201ENST00000384527 107 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 MIR765-201ENST00000390226 114 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-131P-201ENST00000391144 107 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC114755.2-201ENST00000413520 361 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AL645608.4-201ENST00000423619 154 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 165.3 ms