Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.66□□□□□ -1.82
VRK3Q8IV63 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.66□□□□□ -1.82
VRK3Q8IV63 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VRK3Q8IV63 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.66□□□□□ -1.82
VRK3Q8IV63 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VRK3Q8IV63 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VRK3Q8IV63 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
VRK3Q8IV63 MTND5P27-201ENST00000428871 1720 ntBASIC3.65□□□□□ -1.82
VRK3Q8IV63 Y_RNA.2-201ENST00000362330 96 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 Y_RNA.39-201ENST00000362620 98 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNU6-1059P-201ENST00000363752 98 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNU6-596P-201ENST00000365395 98 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNA5SP424-201ENST00000390988 115 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 HMGN2P8-201ENST00000391458 268 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RPL21P1-201ENST00000399532 476 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AL139039.1-201ENST00000401900 692 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RPS4XP7-201ENST00000406274 780 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 CYCSP19-201ENST00000411715 316 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 MRPS18CP6-201ENST00000423587 223 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 NDUFB1P1-201ENST00000435191 180 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.65□□□□□ -1.83
VRK3Q8IV63 NEFMP1-201ENST00000443423 1006 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC073910.1-201ENST00000445047 438 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 SUMO1P2-201ENST00000452524 304 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC234775.1-201ENST00000454247 670 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.65□□□□□ -1.83
VRK3Q8IV63 VN1R104P-201ENST00000505115 1009 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 SNORA31.3-201ENST00000516029 96 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNU6-1143P-201ENST00000516125 104 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNU2-53P-201ENST00000516257 147 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 RNA5SP143-201ENST00000516936 115 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC131281.1-201ENST00000522984 164 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 MIR4512-201ENST00000583257 77 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC012119.1-201ENST00000603184 222 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC007619.2-201ENST00000605743 379 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VRK3Q8IV63 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.65□□□□□ -1.83
VRK3Q8IV63 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VRK3Q8IV63 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VRK3Q8IV63 AC006504.1-201ENST00000562493 3666 ntBASIC3.65□□□□□ -1.83
VRK3Q8IV63 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 Y_RNA.276-201ENST00000364732 109 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 SNORA23-201ENST00000365128 182 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 RNU6-190P-201ENST00000384154 102 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 Y_RNA.552-201ENST00000384665 112 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL590704.1-201ENST00000402856 794 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 HSPE1P8-201ENST00000406997 288 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC092809.3-201ENST00000415453 231 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL356968.1-201ENST00000416622 474 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL160275.3-201ENST00000423876 471 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL158071.1-201ENST00000430315 461 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 ARL5AP4-201ENST00000430731 512 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 OSTCP8-201ENST00000445117 448 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 FTH1P25-201ENST00000447665 469 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 IFNWP4-201ENST00000453148 294 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 HIGD1AP3-201ENST00000515857 278 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 RNU6-677P-201ENST00000516914 101 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 RN7SKP40-201ENST00000517211 242 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC023157.2-201ENST00000540596 141 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC025423.5-201ENST00000550230 219 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC016727.2-201ENST00000603988 621 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 AL158032.1-201ENST00000605401 106 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 AC078938.1-201ENST00000620993 318 ntBASIC3.64□□□□□ -1.83
VRK3Q8IV63 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.64□□□□□ -1.83
VRK3Q8IV63 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VRK3Q8IV63 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.63□□□□□ -1.83
VRK3Q8IV63 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VRK3Q8IV63 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VRK3Q8IV63 NCAPGP1-201ENST00000505112 1814 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VRK3Q8IV63 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.63□□□□□ -1.83
VRK3Q8IV63 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.63□□□□□ -1.83
VRK3Q8IV63 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VRK3Q8IV63 AC138393.1-203ENST00000327086 343 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 RNA5SP124-201ENST00000362739 110 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 RNU6-1329P-201ENST00000365664 107 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 Y_RNA.424-201ENST00000384063 103 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 Y_RNA.480-201ENST00000384364 102 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 RNU1-89P-201ENST00000384592 164 ntBASIC3.63□□□□□ -1.83
VRK3Q8IV63 SNORA11-201ENST00000408789 128 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms