Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 HMGA1P5-201ENST00000412453 271 ntBASIC19.91■□□□□ 0.78
USP3Q9Y6I4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 AP003041.3-201ENST00000527151 707 ntBASIC19.91■□□□□ 0.78
USP3Q9Y6I4 FP475955.4-201ENST00000623131 1990 ntBASIC19.91■□□□□ 0.78
USP3Q9Y6I4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 KRT8P3-201ENST00000519669 1449 ntBASIC19.91■□□□□ 0.78
USP3Q9Y6I4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 TERF1P1-201ENST00000311003 1181 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 AC005521.1-201ENST00000393351 872 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 FAM210CP-201ENST00000445714 574 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 AC008622.2-201ENST00000617006 1229 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 BX323043.1-201ENST00000641006 1765 ntBASIC19.9■□□□□ 0.78
USP3Q9Y6I4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.9■□□□□ 0.78
USP3Q9Y6I4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
USP3Q9Y6I4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 AC010203.1-204ENST00000548782 407 ntBASIC19.89■□□□□ 0.77
USP3Q9Y6I4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 AC018445.3-201ENST00000624177 1945 ntBASIC19.89■□□□□ 0.77
USP3Q9Y6I4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP3Q9Y6I4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.88■□□□□ 0.77
USP3Q9Y6I4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 AL161938.1-201ENST00000569833 2180 ntBASIC19.87■□□□□ 0.77
USP3Q9Y6I4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 AL137013.1-201ENST00000432946 1228 ntBASIC19.87■□□□□ 0.77
USP3Q9Y6I4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 AC092865.7-201ENST00000641832 219 ntBASIC19.87■□□□□ 0.77
USP3Q9Y6I4 AC098818.2-201ENST00000564925 2320 ntBASIC19.87■□□□□ 0.77
USP3Q9Y6I4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.87■□□□□ 0.77
USP3Q9Y6I4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms