Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 AC004980.1-204ENST00000429707 299 ntBASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 KRT8P10-201ENST00000450021 1447 ntBASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC14.68□□□□□ -0.06
NOTCH3Q9UM47 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 AC026396.1-201ENST00000419388 421 ntBASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 PCED1CP-201ENST00000419887 785 ntBASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 FEM1AP1-201ENST00000431297 1995 ntBASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 AP005212.1-201ENST00000581547 1997 ntBASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NOTCH3Q9UM47 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 FAM86EP-206ENST00000510506 987 ntBASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 AL512604.3-201ENST00000569583 964 ntBASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC14.66□□□□□ -0.06
NOTCH3Q9UM47 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms