Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 CKBP1-201ENST00000565489 1086 ntBASIC19.58■□□□□ 0.72
VPS28Q9UK41 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 AC012306.2-201ENST00000609350 630 ntBASIC19.58■□□□□ 0.72
VPS28Q9UK41 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 Z82202.1-201ENST00000623446 1880 ntBASIC19.58■□□□□ 0.72
VPS28Q9UK41 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 TNXA-203ENST00000507684 2038 ntBASIC19.58■□□□□ 0.72
VPS28Q9UK41 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 PRSS44-201ENST00000515154 1146 ntBASIC19.57■□□□□ 0.72
VPS28Q9UK41 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS28Q9UK41 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS28Q9UK41 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.56■□□□□ 0.72
VPS28Q9UK41 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS28Q9UK41 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 KRT18P22-201ENST00000402024 1347 ntBASIC19.55■□□□□ 0.72
VPS28Q9UK41 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 AP000974.1-201ENST00000623909 2387 ntBASIC19.55■□□□□ 0.72
VPS28Q9UK41 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS28Q9UK41 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.55■□□□□ 0.72
VPS28Q9UK41 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 TSPY21P-201ENST00000433481 731 ntBASIC19.55■□□□□ 0.72
VPS28Q9UK41 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 EGLN1P1-201ENST00000531623 762 ntBASIC19.55■□□□□ 0.72
VPS28Q9UK41 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS28Q9UK41 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms