Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 MFAP1P1-201ENST00000442257 1255 ntBASIC21.87■■□□□ 1.09
DDX41Q9UJV9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.87■■□□□ 1.09
DDX41Q9UJV9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 AC104076.2-201ENST00000448912 469 ntBASIC21.86■■□□□ 1.09
DDX41Q9UJV9 AC128688.1-201ENST00000487626 519 ntBASIC21.86■■□□□ 1.09
DDX41Q9UJV9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 FAM87A-204ENST00000613235 858 ntBASIC21.86■■□□□ 1.09
DDX41Q9UJV9 AL590326.2-201ENST00000625139 305 ntBASIC21.86■■□□□ 1.09
DDX41Q9UJV9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
DDX41Q9UJV9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 LINC01465-201ENST00000408887 1940 ntBASIC21.85■■□□□ 1.09
DDX41Q9UJV9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
DDX41Q9UJV9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX41Q9UJV9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms