Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ESRRAP1-201ENST00000400596 1257 ntBASIC17■□□□□ 0.31
VSX1Q9NZR4 KRASP1-201ENST00000407852 552 ntBASIC17■□□□□ 0.31
VSX1Q9NZR4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
VSX1Q9NZR4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17■□□□□ 0.31
VSX1Q9NZR4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17■□□□□ 0.31
VSX1Q9NZR4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17■□□□□ 0.31
VSX1Q9NZR4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.99■□□□□ 0.31
VSX1Q9NZR4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 AC133681.1-201ENST00000465482 601 ntBASIC16.99■□□□□ 0.31
VSX1Q9NZR4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VSX1Q9NZR4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 Z98044.1-201ENST00000632503 1764 ntBASIC16.98■□□□□ 0.31
VSX1Q9NZR4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 TSPY23P-201ENST00000440136 739 ntBASIC16.98■□□□□ 0.31
VSX1Q9NZR4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.98■□□□□ 0.31
VSX1Q9NZR4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VSX1Q9NZR4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms