Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 MFAP1P1-201ENST00000442257 1255 ntBASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC113Q9H0I3 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 Z82202.1-201ENST00000623446 1880 ntBASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 KRT8P11-201ENST00000409686 1436 ntBASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 AC145285.6-201ENST00000604632 637 ntBASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC113Q9H0I3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 NAPSB-206ENST00000562112 1266 ntBASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC113Q9H0I3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 CKBP1-201ENST00000565489 1086 ntBASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC113Q9H0I3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC113Q9H0I3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms