Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NEK4P2-201ENST00000580004 1012 ntBASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
PAAF1Q9BRP4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 AC036111.1-201ENST00000533973 1582 ntBASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 UPK3BP1-201ENST00000428678 509 ntBASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 AL671277.2-201ENST00000458060 996 ntBASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.31■□□□□ 0.84
PAAF1Q9BRP4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 SPDYE15P-201ENST00000424157 909 ntBASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PAAF1Q9BRP4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 AC112907.2-201ENST00000448639 330 ntBASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 AC091076.1-201ENST00000610741 619 ntBASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 HYMAI.1-201ENST00000620949 238 ntBASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PAAF1Q9BRP4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PAAF1Q9BRP4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms