Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.27□□□□□ -0.12
LINC00477Q96M19 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.27□□□□□ -0.12
LINC00477Q96M19 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.27□□□□□ -0.12
LINC00477Q96M19 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC14.27□□□□□ -0.12
LINC00477Q96M19 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC14.27□□□□□ -0.12
LINC00477Q96M19 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 TSPY21P-201ENST00000433481 731 ntBASIC14.27□□□□□ -0.13
LINC00477Q96M19 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00477Q96M19 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00477Q96M19 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 MIR935-201ENST00000401179 91 ntBASIC14.26□□□□□ -0.13
LINC00477Q96M19 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 AC083880.1-201ENST00000608266 535 ntBASIC14.26□□□□□ -0.13
LINC00477Q96M19 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LINC00477Q96M19 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00477Q96M19 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 UNC93B4-201ENST00000505679 747 ntBASIC14.25□□□□□ -0.13
LINC00477Q96M19 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 RGMA-211ENST00000557420 989 ntTSL 3 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 AL109923.1-201ENST00000618799 583 ntBASIC14.25□□□□□ -0.13
LINC00477Q96M19 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms