Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 AP002982.1-201ENST00000492365 877 ntBASIC18.22■□□□□ 0.51
VMP1Q96GC9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 AF186192.3-201ENST00000583427 947 ntBASIC18.22■□□□□ 0.51
VMP1Q96GC9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.22■□□□□ 0.51
VMP1Q96GC9 AL049637.2-201ENST00000641778 930 ntBASIC18.22■□□□□ 0.51
VMP1Q96GC9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 TMEM179-206ENST00000616017 1645 ntBASIC18.22■□□□□ 0.51
VMP1Q96GC9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VMP1Q96GC9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 AC093484.2-201ENST00000580996 2166 ntBASIC18.21■□□□□ 0.51
VMP1Q96GC9 AL138781.2-201ENST00000617896 1843 ntBASIC18.21■□□□□ 0.51
VMP1Q96GC9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 C1QL1P1-201ENST00000568105 661 ntBASIC18.21■□□□□ 0.51
VMP1Q96GC9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 AL353708.3-201ENST00000610272 989 ntBASIC18.21■□□□□ 0.51
VMP1Q96GC9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VMP1Q96GC9 AC007613.1-201ENST00000572811 2597 ntBASIC18.21■□□□□ 0.51
VMP1Q96GC9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.21■□□□□ 0.51
VMP1Q96GC9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.2■□□□□ 0.5
VMP1Q96GC9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VMP1Q96GC9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 AL596275.1-201ENST00000423464 877 ntBASIC18.19■□□□□ 0.5
VMP1Q96GC9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 MIR4497-201ENST00000583208 89 ntBASIC18.19■□□□□ 0.5
VMP1Q96GC9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.19■□□□□ 0.5
VMP1Q96GC9 AC073195.1-201ENST00000607241 877 ntBASIC18.19■□□□□ 0.5
VMP1Q96GC9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 AC113410.3-201ENST00000623366 203 ntBASIC18.19■□□□□ 0.5
VMP1Q96GC9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VMP1Q96GC9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms