Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC15.21■□□□□ 0.03
CLRN3Q8NCR9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN3Q8NCR9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN3Q8NCR9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CLRN3Q8NCR9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN3Q8NCR9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 RARRES2P1-201ENST00000474487 481 ntBASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN3Q8NCR9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 CROCCP1-201ENST00000426910 5675 ntBASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN3Q8NCR9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 AC141586.3-201ENST00000562166 1838 ntBASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 KRT125P-201ENST00000546827 989 ntBASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN3Q8NCR9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms