Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AC092119.3-201ENST00000612618 583 ntBASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AL691432.3-201ENST00000621860 400 ntBASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 AC036111.1-201ENST00000533973 1582 ntBASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 AC024243.1-201ENST00000609234 778 ntBASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 SLC25A24-204ENST00000569674 2357 ntBASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.7■□□□□ 0.74
NPAS3Q8IXF0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 AL023284.2-201ENST00000405850 579 ntBASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS3Q8IXF0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS3Q8IXF0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 TCF3P1-201ENST00000423021 1937 ntBASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS3Q8IXF0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms