Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 AC022211.2-201ENST00000585075 2527 ntBASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 MIR3181-201ENST00000578512 73 ntBASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 AL138724.1-201ENST00000606771 1088 ntBASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 RASSF1-AS1-201ENST00000629828 790 ntBASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28AQ8IWP9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 AL691432.2-201ENST00000607222 2038 ntBASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 Z98044.1-201ENST00000632503 1764 ntBASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC28AQ8IWP9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 AL136116.3-201ENST00000402907 1138 ntBASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 AC131281.2-201ENST00000520478 145 ntBASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 AC134043.2-201ENST00000624206 2238 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms