Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 AC079781.3-201ENST00000449110 356 ntBASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.81□□□□□ -0.36
VPS13DQ5THJ4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AC243591.1-201ENST00000452967 1364 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 Z83836.1-201ENST00000624605 1642 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 GAS2L1P1-201ENST00000420145 1480 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AL390719.2-201ENST00000606993 987 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AL353801.3-201ENST00000609898 542 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 ZNF815P-204ENST00000434898 1737 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 AC099778.1-201ENST00000568593 1911 ntBASIC12.8□□□□□ -0.36
VPS13DQ5THJ4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 AC091304.2-201ENST00000564639 760 ntBASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 NUS1P1-201ENST00000446295 882 ntBASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 AP000593.1-201ENST00000393668 712 ntBASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 IGHV3-47-201ENST00000425060 335 ntBASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 MIR3180-5-201ENST00000583743 153 ntBASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS13DQ5THJ4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms