Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC31.93■■■□□ 2.7
CUX1P39880 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC31.92■■■□□ 2.7
CUX1P39880 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
CUX1P39880 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC31.92■■■□□ 2.7
CUX1P39880 GRAMD4P1-201ENST00000435181 1110 ntBASIC31.92■■■□□ 2.7
CUX1P39880 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC31.92■■■□□ 2.7
CUX1P39880 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC31.92■■■□□ 2.7
CUX1P39880 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
CUX1P39880 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX1P39880 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC31.92■■■□□ 2.7
CUX1P39880 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC31.92■■■□□ 2.7
CUX1P39880 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC31.91■■■□□ 2.7
CUX1P39880 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC31.91■■■□□ 2.7
CUX1P39880 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC31.91■■■□□ 2.7
CUX1P39880 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC31.91■■■□□ 2.7
CUX1P39880 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
CUX1P39880 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX1P39880 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 GXYLT1P4-201ENST00000613576 1192 ntBASIC31.9■■■□□ 2.7
CUX1P39880 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX1P39880 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX1P39880 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
CUX1P39880 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX1P39880 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX1P39880 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX1P39880 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 AC007375.3-201ENST00000600936 2314 ntBASIC31.9■■■□□ 2.7
CUX1P39880 BAALC-202ENST00000306391 243 ntTSL 5 BASIC31.9■■■□□ 2.7
CUX1P39880 BAALC-204ENST00000330955 222 ntTSL 5 BASIC31.9■■■□□ 2.7
CUX1P39880 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX1P39880 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
CUX1P39880 KRT16P4-201ENST00000453883 522 ntBASIC31.9■■■□□ 2.7
CUX1P39880 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX1P39880 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX1P39880 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC31.89■■■□□ 2.7
CUX1P39880 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 Z83836.1-201ENST00000624605 1642 ntBASIC31.89■■■□□ 2.7
CUX1P39880 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC31.89■■■□□ 2.7
CUX1P39880 AC010240.3-201ENST00000607688 395 ntBASIC31.89■■■□□ 2.7
CUX1P39880 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX1P39880 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
CUX1P39880 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CUX1P39880 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX1P39880 HOXB1-202ENST00000577092 1414 ntBASIC31.88■■■□□ 2.69
CUX1P39880 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX1P39880 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX1P39880 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX1P39880 TEN1-204ENST00000588202 862 ntTSL 3 BASIC31.88■■■□□ 2.69
CUX1P39880 AC006538.3-201ENST00000612495 578 ntBASIC31.88■■■□□ 2.69
CUX1P39880 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX1P39880 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
CUX1P39880 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC31.87■■■□□ 2.69
CUX1P39880 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC31.87■■■□□ 2.69
CUX1P39880 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 TK1-205ENST00000590862 642 ntTSL 3 BASIC31.87■■■□□ 2.69
CUX1P39880 AC138894.3-201ENST00000603787 634 ntBASIC31.87■■■□□ 2.69
CUX1P39880 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
CUX1P39880 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
CUX1P39880 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC31.87■■■□□ 2.69
CUX1P39880 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX1P39880 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
CUX1P39880 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC31.86■■■□□ 2.69
CUX1P39880 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
CUX1P39880 LINC00167-201ENST00000530583 1419 ntBASIC31.86■■■□□ 2.69
CUX1P39880 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CUX1P39880 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms