Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CDH3P22223 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 AC120498.9-201ENST00000339021 3867 ntBASIC18.63■□□□□ 0.57
CDH3P22223 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CDH3P22223 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDH3P22223 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.63■□□□□ 0.57
CDH3P22223 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
CDH3P22223 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.63■□□□□ 0.57
CDH3P22223 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.63■□□□□ 0.57
CDH3P22223 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.63■□□□□ 0.57
CDH3P22223 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 RCC2P6-201ENST00000526625 1557 ntBASIC18.63■□□□□ 0.57
CDH3P22223 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDH3P22223 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CDH3P22223 AC116562.4-201ENST00000641316 2276 ntBASIC18.62■□□□□ 0.57
CDH3P22223 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.62■□□□□ 0.57
CDH3P22223 MESTP1-201ENST00000404287 994 ntBASIC18.62■□□□□ 0.57
CDH3P22223 AC004951.3-201ENST00000418645 1148 ntBASIC18.62■□□□□ 0.57
CDH3P22223 AL390955.1-201ENST00000428694 934 ntBASIC18.62■□□□□ 0.57
CDH3P22223 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.62■□□□□ 0.57
CDH3P22223 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.62■□□□□ 0.57
CDH3P22223 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.62■□□□□ 0.57
CDH3P22223 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CDH3P22223 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH3P22223 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH3P22223 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.62■□□□□ 0.57
CDH3P22223 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.62■□□□□ 0.57
CDH3P22223 AC011298.2-201ENST00000617989 482 ntBASIC18.62■□□□□ 0.57
CDH3P22223 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.62■□□□□ 0.57
CDH3P22223 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDH3P22223 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 LINC01465-201ENST00000408887 1940 ntBASIC18.61■□□□□ 0.57
CDH3P22223 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH3P22223 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CDH3P22223 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH3P22223 DGCR10-201ENST00000609839 495 ntBASIC18.61■□□□□ 0.57
CDH3P22223 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.61■□□□□ 0.57
CDH3P22223 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDH3P22223 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.61■□□□□ 0.57
CDH3P22223 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH3P22223 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.6■□□□□ 0.57
CDH3P22223 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms