Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 PAWRP1-201ENST00000451083 565 ntBASIC19.6■□□□□ 0.73
COL9A1P20849 AC092597.1-201ENST00000487352 616 ntBASIC19.6■□□□□ 0.73
COL9A1P20849 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.6■□□□□ 0.73
COL9A1P20849 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.6■□□□□ 0.73
COL9A1P20849 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.6■□□□□ 0.73
COL9A1P20849 AC134684.3-201ENST00000641758 218 ntBASIC19.6■□□□□ 0.73
COL9A1P20849 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.59■□□□□ 0.73
COL9A1P20849 FEM1AP1-201ENST00000431297 1995 ntBASIC19.59■□□□□ 0.73
COL9A1P20849 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL9A1P20849 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
COL9A1P20849 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.59■□□□□ 0.73
COL9A1P20849 SAPCD2P3-201ENST00000455031 850 ntBASIC19.59■□□□□ 0.73
COL9A1P20849 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.59■□□□□ 0.73
COL9A1P20849 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
COL9A1P20849 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.59■□□□□ 0.73
COL9A1P20849 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.59■□□□□ 0.73
COL9A1P20849 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL9A1P20849 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 AC243591.1-201ENST00000452967 1364 ntBASIC19.58■□□□□ 0.73
COL9A1P20849 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL9A1P20849 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 AP001271.2-201ENST00000624018 1556 ntBASIC19.58■□□□□ 0.73
COL9A1P20849 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL9A1P20849 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL9A1P20849 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL9A1P20849 AC245100.3-201ENST00000441281 285 ntBASIC19.58■□□□□ 0.72
COL9A1P20849 FAM197Y8-203ENST00000450145 560 ntBASIC19.58■□□□□ 0.72
COL9A1P20849 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.58■□□□□ 0.72
COL9A1P20849 AC112482.1-201ENST00000492080 688 ntBASIC19.58■□□□□ 0.72
COL9A1P20849 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.58■□□□□ 0.72
COL9A1P20849 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.58■□□□□ 0.72
COL9A1P20849 AL160286.2-201ENST00000567150 934 ntBASIC19.58■□□□□ 0.72
COL9A1P20849 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
COL9A1P20849 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL9A1P20849 AC073314.1-201ENST00000568729 2216 ntBASIC19.57■□□□□ 0.72
COL9A1P20849 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.57■□□□□ 0.72
COL9A1P20849 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL9A1P20849 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.57■□□□□ 0.72
COL9A1P20849 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.57■□□□□ 0.72
COL9A1P20849 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL9A1P20849 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL9A1P20849 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL9A1P20849 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.57■□□□□ 0.72
COL9A1P20849 METTL21AP1-201ENST00000438852 635 ntBASIC19.57■□□□□ 0.72
COL9A1P20849 TOB2P1-201ENST00000469761 992 ntBASIC19.57■□□□□ 0.72
COL9A1P20849 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 NIFKP4-201ENST00000567275 1192 ntBASIC19.57■□□□□ 0.72
COL9A1P20849 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.57■□□□□ 0.72
COL9A1P20849 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.57■□□□□ 0.72
COL9A1P20849 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL9A1P20849 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL9A1P20849 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.57■□□□□ 0.72
COL9A1P20849 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.56■□□□□ 0.72
COL9A1P20849 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL9A1P20849 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.56■□□□□ 0.72
COL9A1P20849 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.56■□□□□ 0.72
COL9A1P20849 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.56■□□□□ 0.72
COL9A1P20849 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.56■□□□□ 0.72
COL9A1P20849 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.56■□□□□ 0.72
COL9A1P20849 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.56■□□□□ 0.72
COL9A1P20849 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL9A1P20849 AC011467.4-201ENST00000594891 528 ntBASIC19.56■□□□□ 0.72
COL9A1P20849 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL9A1P20849 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms