Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.97■□□□□ 0.95
TPM1P09493 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.97■□□□□ 0.95
TPM1P09493 AC005829.2-201ENST00000571422 1056 ntBASIC20.97■□□□□ 0.95
TPM1P09493 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TPM1P09493 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.97■□□□□ 0.95
TPM1P09493 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 SDHAP1-207ENST00000440850 2000 ntBASIC20.97■□□□□ 0.95
TPM1P09493 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.97■□□□□ 0.95
TPM1P09493 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TPM1P09493 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
TPM1P09493 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
TPM1P09493 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.96■□□□□ 0.95
TPM1P09493 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM1P09493 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.96■□□□□ 0.95
TPM1P09493 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM1P09493 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.96■□□□□ 0.95
TPM1P09493 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TPM1P09493 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.96■□□□□ 0.95
TPM1P09493 KRT8P8-201ENST00000434750 1448 ntBASIC20.95■□□□□ 0.95
TPM1P09493 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.95■□□□□ 0.94
TPM1P09493 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 RAP2CP1-201ENST00000605103 478 ntBASIC20.95■□□□□ 0.94
TPM1P09493 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TPM1P09493 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.95■□□□□ 0.94
TPM1P09493 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TPM1P09493 AP000997.3-201ENST00000623333 2250 ntBASIC20.94■□□□□ 0.94
TPM1P09493 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.94■□□□□ 0.94
TPM1P09493 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 AC133552.2-202ENST00000575694 574 ntBASIC20.94■□□□□ 0.94
TPM1P09493 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TPM1P09493 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.94■□□□□ 0.94
TPM1P09493 AL512353.2-201ENST00000448759 1962 ntBASIC20.94■□□□□ 0.94
TPM1P09493 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.94■□□□□ 0.94
TPM1P09493 AP006587.1-201ENST00000534129 1502 ntBASIC20.94■□□□□ 0.94
TPM1P09493 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.93■□□□□ 0.94
TPM1P09493 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TPM1P09493 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms