Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXC4P09017 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXC4P09017 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HOXC4P09017 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.6■□□□□ 0.57
HOXC4P09017 MIR3180-5-201ENST00000583743 153 ntBASIC18.6■□□□□ 0.57
HOXC4P09017 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
HOXC4P09017 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
HOXC4P09017 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXC4P09017 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 AL158211.5-201ENST00000623583 2518 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HOXC4P09017 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 IRX1P1-201ENST00000438849 1838 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.59■□□□□ 0.57
HOXC4P09017 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.59■□□□□ 0.57
HOXC4P09017 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 AC087388.1-201ENST00000571370 1112 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.59■□□□□ 0.57
HOXC4P09017 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HOXC4P09017 AL109659.2-201ENST00000606809 1674 ntBASIC18.59■□□□□ 0.57
HOXC4P09017 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXC4P09017 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.58■□□□□ 0.57
HOXC4P09017 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.57
HOXC4P09017 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HOXC4P09017 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
HOXC4P09017 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HOXC4P09017 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.58■□□□□ 0.56
HOXC4P09017 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.58■□□□□ 0.56
HOXC4P09017 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
HOXC4P09017 AL512353.2-201ENST00000448759 1962 ntBASIC18.58■□□□□ 0.56
HOXC4P09017 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.58■□□□□ 0.56
HOXC4P09017 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HOXC4P09017 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
HOXC4P09017 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HOXC4P09017 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.58■□□□□ 0.56
HOXC4P09017 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HOXC4P09017 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.57■□□□□ 0.56
HOXC4P09017 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXC4P09017 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 STARP1-201ENST00000397973 869 ntBASIC18.57■□□□□ 0.56
HOXC4P09017 AL031133.1-201ENST00000406807 723 ntBASIC18.57■□□□□ 0.56
HOXC4P09017 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.57■□□□□ 0.56
HOXC4P09017 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
HOXC4P09017 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXC4P09017 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 KRT8P32-201ENST00000512863 1461 ntBASIC18.57■□□□□ 0.56
HOXC4P09017 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.57■□□□□ 0.56
HOXC4P09017 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HOXC4P09017 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.57■□□□□ 0.56
HOXC4P09017 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.57■□□□□ 0.56
HOXC4P09017 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.56■□□□□ 0.56
HOXC4P09017 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HOXC4P09017 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms