Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SPTA1P02549 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SPTA1P02549 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SPTA1P02549 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.24■□□□□ 0.35
SPTA1P02549 GPAT2P1-201ENST00000444924 1672 ntBASIC17.24■□□□□ 0.35
SPTA1P02549 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.24■□□□□ 0.35
SPTA1P02549 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.23■□□□□ 0.35
SPTA1P02549 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.23■□□□□ 0.35
SPTA1P02549 AC007225.1-201ENST00000566331 1836 ntBASIC17.23■□□□□ 0.35
SPTA1P02549 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
SPTA1P02549 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.23■□□□□ 0.35
SPTA1P02549 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.23■□□□□ 0.35
SPTA1P02549 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.23■□□□□ 0.35
SPTA1P02549 POLD2P1-201ENST00000511220 997 ntBASIC17.23■□□□□ 0.35
SPTA1P02549 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.23■□□□□ 0.35
SPTA1P02549 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.23■□□□□ 0.35
SPTA1P02549 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.23■□□□□ 0.35
SPTA1P02549 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.23■□□□□ 0.35
SPTA1P02549 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.23■□□□□ 0.35
SPTA1P02549 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SPTA1P02549 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SPTA1P02549 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SPTA1P02549 AL049796.1-201ENST00000565336 1766 ntBASIC17.23■□□□□ 0.35
SPTA1P02549 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SPTA1P02549 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.22■□□□□ 0.35
SPTA1P02549 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 AL035633.1-201ENST00000406139 838 ntBASIC17.22■□□□□ 0.35
SPTA1P02549 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.22■□□□□ 0.35
SPTA1P02549 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.22■□□□□ 0.35
SPTA1P02549 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SPTA1P02549 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.22■□□□□ 0.35
SPTA1P02549 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SPTA1P02549 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SPTA1P02549 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 AL391422.3-201ENST00000603791 2761 ntBASIC17.22■□□□□ 0.35
SPTA1P02549 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.22■□□□□ 0.35
SPTA1P02549 MIR564-202ENST00000385049 94 ntBASIC17.22■□□□□ 0.35
SPTA1P02549 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.22■□□□□ 0.35
SPTA1P02549 AC138894.3-201ENST00000603787 634 ntBASIC17.22■□□□□ 0.35
SPTA1P02549 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.22■□□□□ 0.35
SPTA1P02549 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SPTA1P02549 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPTA1P02549 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.21■□□□□ 0.35
SPTA1P02549 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.21■□□□□ 0.35
SPTA1P02549 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.21■□□□□ 0.35
SPTA1P02549 AC005104.2-201ENST00000427818 678 ntBASIC17.21■□□□□ 0.35
SPTA1P02549 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.21■□□□□ 0.35
SPTA1P02549 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SPTA1P02549 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.21■□□□□ 0.35
SPTA1P02549 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.21■□□□□ 0.35
SPTA1P02549 AC104819.1-201ENST00000504587 486 ntBASIC17.21■□□□□ 0.35
SPTA1P02549 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.21■□□□□ 0.35
SPTA1P02549 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.21■□□□□ 0.35
SPTA1P02549 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.21■□□□□ 0.35
SPTA1P02549 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 AL157888.1-201ENST00000631930 593 ntBASIC17.21■□□□□ 0.35
SPTA1P02549 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SPTA1P02549 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPTA1P02549 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
SPTA1P02549 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.21■□□□□ 0.34
SPTA1P02549 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.21■□□□□ 0.34
SPTA1P02549 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SPTA1P02549 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPTA1P02549 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.2■□□□□ 0.34
SPTA1P02549 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.2■□□□□ 0.34
SPTA1P02549 AP001160.2-201ENST00000596071 487 ntBASIC17.2■□□□□ 0.34
SPTA1P02549 AL136038.4-201ENST00000603606 1261 ntBASIC17.2■□□□□ 0.34
SPTA1P02549 AC027601.4-201ENST00000611259 610 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms