Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.33■■□□□ 1.33
COL4A1P02462 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
COL4A1P02462 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
COL4A1P02462 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
COL4A1P02462 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A1P02462 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A1P02462 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A1P02462 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC23.33■■□□□ 1.33
COL4A1P02462 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC23.33■■□□□ 1.33
COL4A1P02462 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.33■■□□□ 1.33
COL4A1P02462 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.33■■□□□ 1.33
COL4A1P02462 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A1P02462 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.33■■□□□ 1.33
COL4A1P02462 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC23.33■■□□□ 1.32
COL4A1P02462 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL4A1P02462 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
COL4A1P02462 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC23.33■■□□□ 1.32
COL4A1P02462 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A1P02462 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A1P02462 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A1P02462 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
COL4A1P02462 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL4A1P02462 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.32■■□□□ 1.32
COL4A1P02462 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.32■■□□□ 1.32
COL4A1P02462 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL4A1P02462 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC23.32■■□□□ 1.32
COL4A1P02462 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL4A1P02462 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A1P02462 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A1P02462 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 LINC01521-201ENST00000504184 1943 ntBASIC23.31■■□□□ 1.32
COL4A1P02462 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC23.31■■□□□ 1.32
COL4A1P02462 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC23.31■■□□□ 1.32
COL4A1P02462 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.31■■□□□ 1.32
COL4A1P02462 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC23.31■■□□□ 1.32
COL4A1P02462 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC23.31■■□□□ 1.32
COL4A1P02462 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL4A1P02462 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
COL4A1P02462 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
COL4A1P02462 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
COL4A1P02462 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.3■■□□□ 1.32
COL4A1P02462 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 KRT8P3-201ENST00000519669 1449 ntBASIC23.3■■□□□ 1.32
COL4A1P02462 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.3■■□□□ 1.32
COL4A1P02462 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC23.3■■□□□ 1.32
COL4A1P02462 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
COL4A1P02462 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL4A1P02462 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.29■■□□□ 1.32
COL4A1P02462 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC23.29■■□□□ 1.32
COL4A1P02462 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 HLA-F-220ENST00000434407 884 ntBASIC23.29■■□□□ 1.32
COL4A1P02462 MCCD1P1-208ENST00000445732 328 ntBASIC23.29■■□□□ 1.32
COL4A1P02462 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.29■■□□□ 1.32
COL4A1P02462 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.29■■□□□ 1.32
COL4A1P02462 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC23.29■■□□□ 1.32
COL4A1P02462 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
COL4A1P02462 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms