Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 AC126763.1-201ENST00000552015 2118 ntBASIC14.33□□□□□ -0.12
HLA-DQA1P01909 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 OR6D1P-203ENST00000641209 4860 ntBASIC14.33□□□□□ -0.12
HLA-DQA1P01909 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 TNRC18P3-201ENST00000441896 2691 ntBASIC14.32□□□□□ -0.12
HLA-DQA1P01909 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.32□□□□□ -0.12
HLA-DQA1P01909 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 AC007322.3-201ENST00000426526 701 ntBASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 SUDS3P1-201ENST00000505831 966 ntBASIC14.32□□□□□ -0.12
HLA-DQA1P01909 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ANO7L1-203ENST00000602586 1720 ntBASIC14.32□□□□□ -0.12
HLA-DQA1P01909 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HLA-DQA1P01909 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 MFF-208ENST00000409616 1247 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 NME4-211ENST00000620944 1193 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DQA1P01909 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DQA1P01909 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms