Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.23■□□□□ 0.35
SSX4O60224 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SSX4O60224 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SSX4O60224 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 AC087633.2-202ENST00000565166 1439 ntBASIC17.23■□□□□ 0.35
SSX4O60224 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SSX4O60224 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.23■□□□□ 0.35
SSX4O60224 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 MIR4497-201ENST00000583208 89 ntBASIC17.23■□□□□ 0.35
SSX4O60224 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.23■□□□□ 0.35
SSX4O60224 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SSX4O60224 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.23■□□□□ 0.35
SSX4O60224 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SSX4O60224 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SSX4O60224 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SSX4O60224 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
SSX4O60224 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.22■□□□□ 0.35
SSX4O60224 Z99916.2-201ENST00000604037 246 ntBASIC17.22■□□□□ 0.35
SSX4O60224 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
SSX4O60224 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SSX4O60224 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.22■□□□□ 0.35
SSX4O60224 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SSX4O60224 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.21■□□□□ 0.35
SSX4O60224 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.21■□□□□ 0.35
SSX4O60224 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SSX4O60224 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 AL354751.1-201ENST00000412768 1863 ntBASIC17.21■□□□□ 0.35
SSX4O60224 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SSX4O60224 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.21■□□□□ 0.35
SSX4O60224 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SSX4O60224 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SSX4O60224 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SSX4O60224 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.21■□□□□ 0.35
SSX4O60224 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SSX4O60224 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SSX4O60224 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SSX4O60224 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
SSX4O60224 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SSX4O60224 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSX4O60224 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms