Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CLDN3O15551 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.81■□□□□ 0.92
CLDN3O15551 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.81■□□□□ 0.92
CLDN3O15551 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN3O15551 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CLDN3O15551 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.8■□□□□ 0.92
CLDN3O15551 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.8■□□□□ 0.92
CLDN3O15551 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.8■□□□□ 0.92
CLDN3O15551 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLDN3O15551 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 SLC25A1P2-201ENST00000430693 912 ntBASIC20.8■□□□□ 0.92
CLDN3O15551 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.8■□□□□ 0.92
CLDN3O15551 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.8■□□□□ 0.92
CLDN3O15551 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.8■□□□□ 0.92
CLDN3O15551 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.8■□□□□ 0.92
CLDN3O15551 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLDN3O15551 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.8■□□□□ 0.92
CLDN3O15551 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLDN3O15551 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.8■□□□□ 0.92
CLDN3O15551 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 AC141586.3-201ENST00000562166 1838 ntBASIC20.8■□□□□ 0.92
CLDN3O15551 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CLDN3O15551 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN3O15551 KRT18P22-201ENST00000402024 1347 ntBASIC20.79■□□□□ 0.92
CLDN3O15551 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.79■□□□□ 0.92
CLDN3O15551 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 CCR12P-201ENST00000446203 998 ntBASIC20.79■□□□□ 0.92
CLDN3O15551 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.79■□□□□ 0.92
CLDN3O15551 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.79■□□□□ 0.92
CLDN3O15551 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CLDN3O15551 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CLDN3O15551 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CLDN3O15551 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN3O15551 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CLDN3O15551 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.78■□□□□ 0.92
CLDN3O15551 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 AC128688.1-201ENST00000487626 519 ntBASIC20.78■□□□□ 0.92
CLDN3O15551 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 AC116562.4-202ENST00000641738 218 ntBASIC20.78■□□□□ 0.92
CLDN3O15551 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 AC005332.7-201ENST00000614046 2005 ntBASIC20.78■□□□□ 0.92
CLDN3O15551 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CLDN3O15551 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN3O15551 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLDN3O15551 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.77■□□□□ 0.92
CLDN3O15551 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.77■□□□□ 0.92
CLDN3O15551 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms