Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB3O15347 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB3O15347 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB3O15347 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HMGB3O15347 KRT16P6-202ENST00000425692 1426 ntBASIC15.33■□□□□ 0.04
HMGB3O15347 KRT8P17-201ENST00000453110 1448 ntBASIC15.33■□□□□ 0.04
HMGB3O15347 RBM17P2-201ENST00000616397 1405 ntBASIC15.33■□□□□ 0.04
HMGB3O15347 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 AP001330.3-201ENST00000520123 633 ntBASIC15.32■□□□□ 0.04
HMGB3O15347 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
HMGB3O15347 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC15.32■□□□□ 0.04
HMGB3O15347 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 AP001160.3-201ENST00000601484 763 ntBASIC15.32■□□□□ 0.04
HMGB3O15347 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HMGB3O15347 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HMGB3O15347 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB3O15347 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB3O15347 PTBP1P-201ENST00000554374 1601 ntBASIC15.32■□□□□ 0.04
HMGB3O15347 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HMGB3O15347 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HMGB3O15347 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 EBPL-204ENST00000378272 766 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGB3O15347 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 PGM5P4-201ENST00000421970 445 ntBASIC15.31■□□□□ 0.04
HMGB3O15347 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC15.31■□□□□ 0.04
HMGB3O15347 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGB3O15347 AL354811.1-201ENST00000610286 706 ntBASIC15.31■□□□□ 0.04
HMGB3O15347 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HMGB3O15347 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB3O15347 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB3O15347 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB3O15347 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB3O15347 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
HMGB3O15347 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms