Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.97■□□□□ 0.47
CACNA1AO00555 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.97■□□□□ 0.47
CACNA1AO00555 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CACNA1AO00555 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
CACNA1AO00555 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.96■□□□□ 0.47
CACNA1AO00555 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.96■□□□□ 0.47
CACNA1AO00555 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 AC005336.2-201ENST00000593183 939 ntBASIC17.96■□□□□ 0.47
CACNA1AO00555 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CACNA1AO00555 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CACNA1AO00555 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CACNA1AO00555 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.96■□□□□ 0.47
CACNA1AO00555 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.96■□□□□ 0.47
CACNA1AO00555 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CACNA1AO00555 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CACNA1AO00555 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.95■□□□□ 0.46
CACNA1AO00555 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.95■□□□□ 0.46
CACNA1AO00555 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CACNA1AO00555 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.95■□□□□ 0.46
CACNA1AO00555 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.95■□□□□ 0.46
CACNA1AO00555 AC012640.2-201ENST00000561606 901 ntBASIC17.95■□□□□ 0.46
CACNA1AO00555 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CACNA1AO00555 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CACNA1AO00555 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CACNA1AO00555 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.95■□□□□ 0.46
CACNA1AO00555 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.95■□□□□ 0.46
CACNA1AO00555 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CACNA1AO00555 KRT8P3-201ENST00000519669 1449 ntBASIC17.95■□□□□ 0.46
CACNA1AO00555 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.94■□□□□ 0.46
CACNA1AO00555 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CACNA1AO00555 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.94■□□□□ 0.46
CACNA1AO00555 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CACNA1AO00555 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1AO00555 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.94■□□□□ 0.46
CACNA1AO00555 AC087641.1-201ENST00000557561 1021 ntBASIC17.94■□□□□ 0.46
CACNA1AO00555 MIR5100-201ENST00000579544 119 ntBASIC17.94■□□□□ 0.46
CACNA1AO00555 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1AO00555 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CACNA1AO00555 PHGDH-210ENST00000641115 1638 ntBASIC17.94■□□□□ 0.46
CACNA1AO00555 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.94■□□□□ 0.46
CACNA1AO00555 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1AO00555 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CACNA1AO00555 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CACNA1AO00555 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1AO00555 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CACNA1AO00555 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1AO00555 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1AO00555 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CACNA1AO00555 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
CACNA1AO00555 ALG1L5P-201ENST00000482043 771 ntBASIC17.93■□□□□ 0.46
CACNA1AO00555 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 Z92544.3-201ENST00000624747 417 ntBASIC17.93■□□□□ 0.46
CACNA1AO00555 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1AO00555 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CACNA1AO00555 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
CACNA1AO00555 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 AC005229.4-201ENST00000610085 2198 ntBASIC17.93■□□□□ 0.46
CACNA1AO00555 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.93■□□□□ 0.46
CACNA1AO00555 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1AO00555 GAPDHP21-201ENST00000450301 1010 ntBASIC17.93■□□□□ 0.46
CACNA1AO00555 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1AO00555 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1AO00555 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1AO00555 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CACNA1AO00555 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1AO00555 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1AO00555 AC132008.2-207ENST00000454517 770 ntBASIC17.92■□□□□ 0.46
CACNA1AO00555 SIGLEC30P-201ENST00000455569 941 ntBASIC17.92■□□□□ 0.46
CACNA1AO00555 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1AO00555 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1AO00555 AC093028.1-201ENST00000622998 982 ntBASIC17.92■□□□□ 0.46
CACNA1AO00555 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1AO00555 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1AO00555 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms