Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
FOXN3O00409 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
FOXN3O00409 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 AL353807.1-201ENST00000427475 662 ntBASIC20.39■□□□□ 0.85
FOXN3O00409 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXN3O00409 AC091390.4-202ENST00000476426 537 ntBASIC20.39■□□□□ 0.85
FOXN3O00409 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.39■□□□□ 0.85
FOXN3O00409 AC142381.4-202ENST00000563973 229 ntBASIC20.39■□□□□ 0.85
FOXN3O00409 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
FOXN3O00409 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXN3O00409 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXN3O00409 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
FOXN3O00409 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXN3O00409 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 RCC2P6-201ENST00000526625 1557 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
FOXN3O00409 KRT16P1-201ENST00000399124 1418 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
FOXN3O00409 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 AL512353.2-201ENST00000448759 1962 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
FOXN3O00409 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
FOXN3O00409 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXN3O00409 AC008040.2-201ENST00000461049 708 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.38■□□□□ 0.85
FOXN3O00409 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.38■□□□□ 0.85
FOXN3O00409 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXN3O00409 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.38■□□□□ 0.85
FOXN3O00409 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.38■□□□□ 0.85
FOXN3O00409 AC073195.1-201ENST00000607241 877 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXN3O00409 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXN3O00409 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
FOXN3O00409 AC093525.10-201ENST00000625130 1569 ntBASIC20.38■□□□□ 0.85
FOXN3O00409 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
FOXN3O00409 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
FOXN3O00409 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
FOXN3O00409 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.37■□□□□ 0.85
FOXN3O00409 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
FOXN3O00409 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.37■□□□□ 0.85
FOXN3O00409 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
FOXN3O00409 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXN3O00409 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.36■□□□□ 0.85
FOXN3O00409 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
FOXN3O00409 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXN3O00409 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXN3O00409 AL031985.4-201ENST00000642138 673 ntBASIC20.36■□□□□ 0.85
FOXN3O00409 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
FOXN3O00409 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
FOXN3O00409 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
FOXN3O00409 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXN3O00409 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXN3O00409 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXN3O00409 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXN3O00409 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
FOXN3O00409 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
FOXN3O00409 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms