Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 AC083906.2-201ENST00000511578 360 ntBASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 AL121832.2-201ENST00000610979 668 ntBASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 AC083906.6-201ENST00000641366 219 ntBASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 AL133373.2-201ENST00000623187 2828 ntBASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM49D1C9J1S8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM49D1C9J1S8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM49D1C9J1S8 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 HLA-B-256ENST00000639848 1089 ntBASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM49D1C9J1S8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.06■□□□□ 0.64
TRIM49D1C9J1S8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms