Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR548A1-201ENST00000385041 97 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 MT-TT-201ENST00000387460 66 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 MIR526A2-201ENST00000390198 65 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC005042.1-201ENST00000393397 800 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AL355497.1-201ENST00000406262 551 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC099670.2-201ENST00000435130 321 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-436P-201ENST00000516171 114 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC122688.1-201ENST00000541494 223 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AL138895.2-201ENST00000603019 178 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 AC131238.1-201ENST00000617135 328 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 RN7SL544P-201ENST00000617232 284 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 MIR6729-201ENST00000618194 65 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 RN7SL763P-201ENST00000620922 284 ntBASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS9D1Q9Y2B5 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-324P-201ENST00000363957 106 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-1082P-201ENST00000364574 107 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 SNORD58C-201ENST00000365223 64 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AL606845.1-201ENST00000404881 255 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC112220.1-201ENST00000434628 355 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AL078601.1-201ENST00000444542 271 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC109327.2-201ENST00000448339 378 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 HMGB3P8-201ENST00000449709 577 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 RPL30P12-201ENST00000474666 353 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 HSPE1P6-201ENST00000479457 291 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 RPL23AP53-201ENST00000521854 457 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC090971.4-201ENST00000560291 1800 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC007842.1-201ENST00000597336 2039 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC027309.3-201ENST00000623419 351 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AL022322.2-201ENST00000624072 20397 ntBASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
VPS9D1Q9Y2B5 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 ADAM24P-201ENST00000398655 2101 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-1249P-201ENST00000363237 111 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 Y_RNA.114-201ENST00000363265 113 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 U3.9-201ENST00000363823 204 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 Y_RNA.179-201ENST00000363844 90 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-72P-201ENST00000384285 79 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 Y_RNA.649-201ENST00000459077 103 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RNU6-65P-201ENST00000516332 98 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RNA5SP54-201ENST00000516951 92 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 snoMBII-202.2-201ENST00000517263 86 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 MIR5688-201ENST00000580619 83 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 AL139124.1-201ENST00000609123 421 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RNA5SP439-201ENST00000617595 124 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 MIR3674-201ENST00000636576 68 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS9D1Q9Y2B5 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms