Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL4A4P53420 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.45□□□□□ -2.02
COL4A4P53420 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.44□□□□□ -2.02
COL4A4P53420 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A4P53420 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A4P53420 MIR21-201ENST00000362134 72 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNA5SP88-201ENST00000365560 109 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 Y_RNA.402-201ENST00000383972 102 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 SNORD115-47-201ENST00000391226 86 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MIR1277-201ENST00000408536 78 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNU2-42P-201ENST00000410697 113 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 NUP35P2-201ENST00000416748 943 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 HMGB1P45-201ENST00000435986 653 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC023512.1-201ENST00000444513 499 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL354710.1-201ENST00000453641 246 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 RPL23AP42-201ENST00000471152 471 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC091951.2-201ENST00000500762 203 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 RN7SKP298-201ENST00000515950 94 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 MIR3670-2-201ENST00000582974 65 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MIR3670-1-201ENST00000584160 65 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MIR3670-3-201ENST00000584855 65 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC087045.1-201ENST00000605856 382 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MIR3670-4-201ENST00000612260 65 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MIR6715B-201ENST00000637172 77 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A4P53420 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A4P53420 PNPT1P2-201ENST00000456768 2050 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL4A4P53420 RNU6-707P-201ENST00000364647 95 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNU6-116P-201ENST00000384042 109 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNU6-348P-201ENST00000384386 107 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNU6-31P-201ENST00000384388 108 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RNU2-41P-201ENST00000410991 178 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MTCYBP24-201ENST00000420387 1106 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 TIMM9P3-201ENST00000428659 274 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 DNAJC19P4-201ENST00000440115 345 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 VN1R10P-201ENST00000447106 875 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 MTND1P18-201ENST00000448191 573 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 OR6C5P-201ENST00000452388 923 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL121769.1-201ENST00000469473 401 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC098583.1-201ENST00000480875 255 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 VPS26AP1-201ENST00000483197 979 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC069439.1-201ENST00000494739 167 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 HMGN1P12-201ENST00000499125 195 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC010587.2-201ENST00000511727 448 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 LRRC34P2-201ENST00000514850 553 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 RPS27AP18-201ENST00000515536 459 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 Y_RNA.702-201ENST00000516843 96 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 OR5AK1P-201ENST00000524837 922 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 HIGD1AP17-201ENST00000554576 276 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.44□□□□□ -2.02
COL4A4P53420 AC023813.4-201ENST00000607580 580 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC098614.4-201ENST00000607601 462 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AP000238.1-201ENST00000608759 426 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL137847.3-201ENST00000611521 109 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AL589743.7-201ENST00000612637 233 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 AC025594.3-201ENST00000613068 790 ntBASIC2.44□□□□□ -2.02
COL4A4P53420 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.44□□□□□ -2.02
COL4A4P53420 RLIMP2-201ENST00000427891 1563 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 MTND5P28-201ENST00000438005 1594 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 Y_RNA.9-201ENST00000362354 101 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 Y_RNA.122-201ENST00000363331 96 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 RNU4-31P-201ENST00000384211 141 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 SAR1AP2-201ENST00000392696 594 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AL354719.1-201ENST00000406535 843 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 RNU6-77P-201ENST00000410554 91 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AL139156.1-201ENST00000412785 841 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 MTCO1P3-201ENST00000429327 192 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 MTND1P28-201ENST00000435623 950 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AL138787.1-202ENST00000437804 898 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 RPL39P40-201ENST00000445481 146 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms