Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
RNF39Q9H2S5 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 SNORD16-201ENST00000362803 99 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 RNA5SP433-201ENST00000364491 114 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 RNA5SP201-201ENST00000410316 124 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 RPS21P8-201ENST00000413365 247 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 RPL35AP31-201ENST00000418340 337 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 AC092047.1-201ENST00000424997 240 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 snoU13.3-201ENST00000459441 104 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 UBE2Q2P9-201ENST00000490086 202 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 AC010598.1-201ENST00000510378 103 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 RNU6-70P-201ENST00000516438 60 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 IGHVII-40-1-201ENST00000517316 58 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 HNRNPDLP4-201ENST00000605144 301 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 MIR6134-201ENST00000617606 109 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 AP001052.1-201ENST00000626421 99 ntBASIC6.92□□□□□ -1.3
RNF39Q9H2S5 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
RNF39Q9H2S5 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RNA5SP110-201ENST00000362638 115 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RNU6-173P-201ENST00000364215 104 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 Y_RNA.410-201ENST00000383992 113 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RNU6-540P-201ENST00000384622 101 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RN7SKP35-201ENST00000517210 151 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 IGLV3-6-201ENST00000523937 250 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 MIR4701-201ENST00000583094 63 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AL034555.1-201ENST00000604816 211 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 RNU6-86P-201ENST00000606534 107 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC126915.2-201ENST00000610957 190 ntBASIC6.91□□□□□ -1.3
RNF39Q9H2S5 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
RNF39Q9H2S5 AC011592.1-201ENST00000624647 3634 ntBASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 MIR518F-201ENST00000384973 87 ntBASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 MRPS21P8-201ENST00000569196 235 ntBASIC6.9□□□□□ -1.3
RNF39Q9H2S5 AL512310.12-203ENST00000640543 90 ntBASIC6.9□□□□□ -1.3
RNF39Q9H2S5 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
RNF39Q9H2S5 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.9□□□□□ -1.31
RNF39Q9H2S5 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms