Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.339-201ENST00000365325 102 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.384-201ENST00000383909 102 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.387-201ENST00000383918 102 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.399-201ENST00000383955 105 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 LAP3P1-201ENST00000403648 294 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL445189.1-201ENST00000405722 338 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 MIR1193-201ENST00000408109 78 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RNA5SP104-201ENST00000410989 118 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL160275.3-201ENST00000423876 471 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL591704.1-201ENST00000432574 275 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RPS29P7-201ENST00000439662 171 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 snoU13.24-201ENST00000458998 104 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-953P-201ENST00000459154 107 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AC092451.1-201ENST00000480211 153 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AP005597.4-201ENST00000526762 229 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 SNRPGP16-201ENST00000533275 226 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RN7SL703P-201ENST00000578485 302 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AC053481.4-201ENST00000583164 216 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL670379.10-201ENST00000604330 253 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AL670379.9-201ENST00000605428 253 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 MIR15A-201ENST00000607334 83 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 U2.17-201ENST00000611454 95 ntBASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-254P-201ENST00000363377 107 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNA5SP97-201ENST00000365006 84 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-213P-201ENST00000384051 104 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-393P-201ENST00000384475 107 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 MIR514A1-201ENST00000385133 98 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 MIR548F5-201ENST00000408421 86 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU4-14P-201ENST00000410858 122 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNA5SP39-201ENST00000411245 120 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RPS12P24-201ENST00000412619 387 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC080125.1-201ENST00000414888 684 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 SAR1AP4-201ENST00000429225 591 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU7-167P-201ENST00000459160 62 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 SNORD19B-201ENST00000459623 84 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 VN1R17P-201ENST00000472048 1090 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AP002812.1-201ENST00000495378 474 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 TBCAP3-201ENST00000512475 312 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 Vault.1-201ENST00000516474 102 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-256P-201ENST00000516747 97 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC022695.1-201ENST00000522089 237 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 MTCO3P23-201ENST00000561363 289 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 MIR4286-201ENST00000580651 93 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 MIR3672-201ENST00000584290 82 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 FP236240.3-201ENST00000623061 327 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 UBE3AP2-201ENST00000429033 2259 ntBASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
PCIF1Q9H4Z3 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.431-201ENST00000384086 102 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 snosnR66.1-201ENST00000391095 99 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 HSPE1P8-201ENST00000406997 288 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MIR1302-11-201ENST00000408051 138 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MIR1302-9-201ENST00000408365 138 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MIR548K-201ENST00000408406 116 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms