Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.7□□□□□ -1.5
COL9A1P20849 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.7□□□□□ -1.5
COL9A1P20849 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
COL9A1P20849 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
COL9A1P20849 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.7□□□□□ -1.5
COL9A1P20849 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.7□□□□□ -1.5
COL9A1P20849 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 Y_RNA.369-201ENST00000365568 117 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 RNU6-763P-201ENST00000390865 106 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 U3.19-201ENST00000390893 196 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 RNU6-1199P-201ENST00000411249 104 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 RPL12P46-201ENST00000436610 195 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 RNA5SP54-201ENST00000516951 92 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 RNA5SP290-201ENST00000517133 127 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.7□□□□□ -1.5
COL9A1P20849 AC011447.4-201ENST00000587562 111 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 AC004467.1-201ENST00000615678 330 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 AC099669.2-201ENST00000616549 437 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 CUL1P1-201ENST00000509510 2425 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 AL359693.1-201ENST00000614959 2407 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
COL9A1P20849 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
COL9A1P20849 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.7□□□□□ -1.5
COL9A1P20849 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC5.7□□□□□ -1.5
COL9A1P20849 AP000547.3-204ENST00000588548 2523 ntBASIC5.7□□□□□ -1.5
COL9A1P20849 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
COL9A1P20849 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL9A1P20849 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
COL9A1P20849 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 SNORA17.1-201ENST00000362945 126 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 Y_RNA.498-201ENST00000384460 102 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 SNORA8.3-201ENST00000384679 139 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 RNU6-460P-201ENST00000391158 108 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 U3.30-201ENST00000391308 210 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 RNU2-54P-201ENST00000410299 190 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 AC006461.1-201ENST00000412637 326 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 OR2AM1P-201ENST00000422137 422 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.69□□□□□ -1.5
COL9A1P20849 IGLV3-24-201ENST00000517477 197 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 AC126615.2-201ENST00000553003 515 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 AC007224.1-201ENST00000564410 144 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC5.69□□□□□ -1.5
COL9A1P20849 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.69□□□□□ -1.5
COL9A1P20849 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.69□□□□□ -1.5
COL9A1P20849 MIR4737-201ENST00000583979 81 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 U6.95-201ENST00000636931 70 ntBASIC5.69□□□□□ -1.5
COL9A1P20849 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL9A1P20849 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL9A1P20849 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.68□□□□□ -1.5
COL9A1P20849 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.68□□□□□ -1.5
COL9A1P20849 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL9A1P20849 AF127577.6-201ENST00000623352 2191 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 MIR626-201ENST00000385032 94 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 RPL23AP17-201ENST00000401064 499 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 DDX39BP1-205ENST00000422507 192 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AC098614.2-201ENST00000426040 255 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 RPL23AP95-201ENST00000426806 265 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AC243964.1-201ENST00000441814 261 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC5.68□□□□□ -1.5
COL9A1P20849 RPS23P2-201ENST00000463671 415 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.68□□□□□ -1.5
COL9A1P20849 SCARNA15.2-201ENST00000516409 127 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms