Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCAL1Q9NZC9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 NOC2LP2-201ENST00000407594 1944 ntBASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 BX276092.2-201ENST00000417668 665 ntBASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.08■□□□□ 0.81
SMARCAL1Q9NZC9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.08■□□□□ 0.8
SMARCAL1Q9NZC9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 RPS2P52-201ENST00000469610 820 ntBASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 AC005829.2-201ENST00000571422 1056 ntBASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCAL1Q9NZC9 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 AC079598.2-202ENST00000546624 1451 ntBASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 SLC29A4P1-201ENST00000398760 971 ntBASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.06■□□□□ 0.8
SMARCAL1Q9NZC9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms