Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 RCC2P6-201ENST00000526625 1557 ntBASIC20.49■□□□□ 0.87
SIX2Q9NPC8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 NEFHP1-201ENST00000412845 2629 ntBASIC20.49■□□□□ 0.87
SIX2Q9NPC8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 AF186192.3-201ENST00000583427 947 ntBASIC20.48■□□□□ 0.87
SIX2Q9NPC8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX2Q9NPC8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 WIZP1-201ENST00000531444 2299 ntBASIC20.47■□□□□ 0.87
SIX2Q9NPC8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 FAM201B-201ENST00000458407 597 ntBASIC20.47■□□□□ 0.87
SIX2Q9NPC8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 RARRES2P10-201ENST00000564312 460 ntBASIC20.47■□□□□ 0.87
SIX2Q9NPC8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 AC009113.1-201ENST00000570267 2443 ntBASIC20.47■□□□□ 0.87
SIX2Q9NPC8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX2Q9NPC8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 AC104581.1-202ENST00000635932 2618 ntBASIC20.46■□□□□ 0.87
SIX2Q9NPC8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 AC098590.1-201ENST00000468126 897 ntBASIC20.46■□□□□ 0.87
SIX2Q9NPC8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SIX2Q9NPC8 KRT16P1-201ENST00000399124 1418 ntBASIC20.45■□□□□ 0.86
SIX2Q9NPC8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms