Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP42Q9H9J4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP42Q9H9J4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 BID-204ENST00000399767 2129 ntTSL 2 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 RN7SL510P-201ENST00000581311 263 ntBASIC24.24■■□□□ 1.47
USP42Q9H9J4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP42Q9H9J4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC24.24■■□□□ 1.47
USP42Q9H9J4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USP42Q9H9J4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USP42Q9H9J4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP42Q9H9J4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP42Q9H9J4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP42Q9H9J4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 AC092597.1-201ENST00000487352 616 ntBASIC24.23■■□□□ 1.47
USP42Q9H9J4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 MIR3652-201ENST00000579335 131 ntBASIC24.23■■□□□ 1.47
USP42Q9H9J4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC24.23■■□□□ 1.47
USP42Q9H9J4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 RASA4DP-201ENST00000460726 1199 ntBASIC24.22■■□□□ 1.47
USP42Q9H9J4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 PRELID1P1-202ENST00000567272 903 ntBASIC24.22■■□□□ 1.47
USP42Q9H9J4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.22■■□□□ 1.47
USP42Q9H9J4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP42Q9H9J4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP42Q9H9J4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP42Q9H9J4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 FDX1P1-201ENST00000449115 551 ntBASIC24.21■■□□□ 1.47
USP42Q9H9J4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP42Q9H9J4 ANKRD18DP-204ENST00000455355 1975 ntBASIC24.21■■□□□ 1.47
USP42Q9H9J4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
USP42Q9H9J4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP42Q9H9J4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP42Q9H9J4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 MIR3180-1-201ENST00000580374 94 ntBASIC24.2■■□□□ 1.46
USP42Q9H9J4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 MIR3180-3-201ENST00000584616 94 ntBASIC24.2■■□□□ 1.46
USP42Q9H9J4 AC092329.2-201ENST00000598402 547 ntBASIC24.2■■□□□ 1.46
USP42Q9H9J4 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
USP42Q9H9J4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP42Q9H9J4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms