Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 AC022616.7-201ENST00000525383 220 ntBASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 AC141257.4-201ENST00000634557 245 ntBASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 AC136944.6-201ENST00000634818 245 ntBASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAIPQ9BWF2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 AC104417.2-201ENST00000562989 1793 ntBASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 RNF152P1-201ENST00000397754 604 ntBASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 LINC01238-205ENST00000567549 1107 ntBASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRAIPQ9BWF2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 COX11P1-201ENST00000489116 835 ntBASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.86■□□□□ 0.93
TRAIPQ9BWF2 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 YBX1P2-201ENST00000489612 999 ntBASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AP003041.3-201ENST00000527151 707 ntBASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AC139887.4-201ENST00000607877 719 ntBASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 MYC-208ENST00000641036 567 ntBASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AL031432.5-201ENST00000641059 760 ntBASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAIPQ9BWF2 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms