Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 FITM1-202ENST00000559294 800 ntBASIC17.5■□□□□ 0.39
TIMP4Q99727 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.5■□□□□ 0.39
TIMP4Q99727 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TIMP4Q99727 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TIMP4Q99727 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 CROCCP3-202ENST00000420820 1947 ntBASIC17.49■□□□□ 0.39
TIMP4Q99727 KRT8P9-201ENST00000558927 1449 ntBASIC17.49■□□□□ 0.39
TIMP4Q99727 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.49■□□□□ 0.39
TIMP4Q99727 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.49■□□□□ 0.39
TIMP4Q99727 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.49■□□□□ 0.39
TIMP4Q99727 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 B3GAT3P1-201ENST00000471720 806 ntBASIC17.49■□□□□ 0.39
TIMP4Q99727 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.49■□□□□ 0.39
TIMP4Q99727 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.49■□□□□ 0.39
TIMP4Q99727 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.49■□□□□ 0.39
TIMP4Q99727 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.49■□□□□ 0.39
TIMP4Q99727 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.49■□□□□ 0.39
TIMP4Q99727 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TIMP4Q99727 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.48■□□□□ 0.39
TIMP4Q99727 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TIMP4Q99727 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TIMP4Q99727 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 AL390955.1-201ENST00000428694 934 ntBASIC17.48■□□□□ 0.39
TIMP4Q99727 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.48■□□□□ 0.39
TIMP4Q99727 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
TIMP4Q99727 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.48■□□□□ 0.39
TIMP4Q99727 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
TIMP4Q99727 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.48■□□□□ 0.39
TIMP4Q99727 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TIMP4Q99727 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.48■□□□□ 0.39
TIMP4Q99727 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TIMP4Q99727 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.48■□□□□ 0.39
TIMP4Q99727 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TIMP4Q99727 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.47■□□□□ 0.39
TIMP4Q99727 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.47■□□□□ 0.39
TIMP4Q99727 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
TIMP4Q99727 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.47■□□□□ 0.39
TIMP4Q99727 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 FAM210CP-201ENST00000445714 574 ntBASIC17.47■□□□□ 0.39
TIMP4Q99727 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.47■□□□□ 0.39
TIMP4Q99727 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.47■□□□□ 0.39
TIMP4Q99727 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.47■□□□□ 0.39
TIMP4Q99727 AC130371.2-201ENST00000619443 611 ntBASIC17.47■□□□□ 0.39
TIMP4Q99727 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TIMP4Q99727 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TIMP4Q99727 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TIMP4Q99727 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TIMP4Q99727 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TIMP4Q99727 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms