Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 KRT16P5-201ENST00000455284 522 ntBASIC18.64■□□□□ 0.57
VPS50Q96JG6 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 Z99916.2-201ENST00000604037 246 ntBASIC18.64■□□□□ 0.57
VPS50Q96JG6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 NBPF21P-201ENST00000425093 1451 ntBASIC18.64■□□□□ 0.57
VPS50Q96JG6 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 MIR4785-201ENST00000585005 73 ntBASIC18.63■□□□□ 0.57
VPS50Q96JG6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 KRT8P17-201ENST00000453110 1448 ntBASIC18.63■□□□□ 0.57
VPS50Q96JG6 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS50Q96JG6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS50Q96JG6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS50Q96JG6 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS50Q96JG6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 KRT16P6-202ENST00000425692 1426 ntBASIC18.61■□□□□ 0.57
VPS50Q96JG6 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS50Q96JG6 SNORA78-201ENST00000459373 127 ntBASIC18.61■□□□□ 0.57
VPS50Q96JG6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS50Q96JG6 AL049637.2-201ENST00000641778 930 ntBASIC18.61■□□□□ 0.57
VPS50Q96JG6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms