Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 TUBB8P6-201ENST00000436895 1288 ntBASIC18.25■□□□□ 0.51
VMP1Q96GC9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VMP1Q96GC9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VMP1Q96GC9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 KRT18P16-201ENST00000510337 1294 ntBASIC18.24■□□□□ 0.51
VMP1Q96GC9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 AC009237.14-201ENST00000609975 1594 ntBASIC18.24■□□□□ 0.51
VMP1Q96GC9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VMP1Q96GC9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.24■□□□□ 0.51
VMP1Q96GC9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 AL049812.1-201ENST00000432563 2267 ntBASIC18.23■□□□□ 0.51
VMP1Q96GC9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.23■□□□□ 0.51
VMP1Q96GC9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VMP1Q96GC9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.23■□□□□ 0.51
VMP1Q96GC9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms