Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.42■□□□□ 0.7
CHFRQ96EP1 NPAP1P7-201ENST00000613027 823 ntBASIC19.42■□□□□ 0.7
CHFRQ96EP1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHFRQ96EP1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CHFRQ96EP1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 LINC01006-201ENST00000333319 2292 ntBASIC19.41■□□□□ 0.7
CHFRQ96EP1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 AL157384.1-201ENST00000445995 2473 ntBASIC19.41■□□□□ 0.7
CHFRQ96EP1 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 AL450487.1-201ENST00000426799 995 ntBASIC19.41■□□□□ 0.7
CHFRQ96EP1 ATP5G2P1-201ENST00000433580 426 ntBASIC19.41■□□□□ 0.7
CHFRQ96EP1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CHFRQ96EP1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHFRQ96EP1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.4■□□□□ 0.7
CHFRQ96EP1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.4■□□□□ 0.7
CHFRQ96EP1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHFRQ96EP1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHFRQ96EP1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHFRQ96EP1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHFRQ96EP1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHFRQ96EP1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHFRQ96EP1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CHFRQ96EP1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.39■□□□□ 0.7
CHFRQ96EP1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 RASA4DP-201ENST00000460726 1199 ntBASIC19.39■□□□□ 0.69
CHFRQ96EP1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.39■□□□□ 0.69
CHFRQ96EP1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.39■□□□□ 0.69
CHFRQ96EP1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHFRQ96EP1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.39■□□□□ 0.69
CHFRQ96EP1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHFRQ96EP1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 TSPY21P-201ENST00000433481 731 ntBASIC19.38■□□□□ 0.69
CHFRQ96EP1 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.38■□□□□ 0.69
CHFRQ96EP1 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms